Publications

* Equal contribution · † Corresponding author

Peer-Reviewed Publications

  1. A pan-disease and population-level single-cell TCRαβ repertoire reference
    Ziwei Xue*, Lize Wu*, Bing Gao*, Ruonan Tian, Yiru Chen, Yicheng Qi, Tianze Dong, Yadan Bai, Yu Zhao, Bing He, Lie Wang, Zuozhu Liu, Jianhua Yao, Linrong Lu, and Wanlu Liu
    Cell Discovery, 2025
  2. Integrating cross-sample and cross-modal data for spatial transcriptomics and metabolomics with SpatialMETA
    Ruonan Tian*, Ziwei Xue*, Yiru Chen, Yicheng Qi, Jian Zhang, Jie Yuan, Dengfeng Ruan, Junxin Lin, Jia Liu, Di Wang, Youqiong Ye, and Wanlu Liu
    Nature Communications, 2025

Manuscripts Under Review / Submitted

  1. Recent advances in single-cell isoform profiling
    Zhejian Yu, Yanhui Chen, Yiru Chen, Yicheng Qi, and Wanlu Liu
    Genomics, Proteomics & Bioinformatics, 2025
  2. Mapping lineage-resolved scRNA-seq data with spatial transcriptomics using TemSOMap
    Xinhai Pan, Alejandro Danies-Lopez, Yiru Chen, and Xiuwei Zhang
    In Pacific Symposium on Biocomputing, 2026
  3. From features to slice: parameter-cloud modeling of spatial transcriptomics for simulation and 3D interpolatory augmentation
    Yiru Chen*, Manfei Xie*, Yunfei Hu, Weiman Yuan, Hirak Sarkar, Bingshan Li, Lu Zhang, and Xin Maizie Zhou
    In RECOMB, 2026
  4. Integrative Inference of Spatially Resolved Cell Lineage Trees using LineageMap
    Xinhai Pan, Yiru Chen, and Xiuwei Zhang
    In RECOMB, 2026

Presentations & Posters

  1. SpatialTCR: An integrated platform for high-resolution spatial sequencing of T cell receptor repertoires
    Ruonan Tian*, Yiru Chen*, Yicheng Qi*, Ziwei Xue, Zhejian Yu, and Wanlu Liu
    In GPB Omics and Bioinformatics Frontiers Symposium, 2025
    Co-first author; Presenting author